Author

Joshua K. Lynch

University of MinnesotaORCID 0000-0001-6032-841XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Organism:human· 2 Assay:metagenomics· 2 Research Focus:software / tool· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Dan KnightsiD· 2 shared Ran BlekhmaniD· 2 shared Ben Hillmann· 1 shared Dimitrios N. SidiropoulosiD· 1 shared Evan Tang· 1 shared Greg Caporaso· 1 shared Jake Larson· 1 shared Jeremy Meulemans· 1 shared

Activity by Year

2017-2017 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersGenomics

Dan KnightsORCID

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2 papers

Recent·Most cited

GenomicsGigaSciencePeer-reviewedNov 7, 2017

HOMINID: A framework for identifying associations between host genetic variation and microbiome composition

Joshua K. Lynch, Karen Tang, Sambhawa Priya…·Ran Blekhman

HOMINID identifies host SNPs correlated with microbiome taxa abundances using Lasso regression, showing improved accuracy over existing methods and identifying 13 SNPs across body sites.

25 citations

humanmetagenomics

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMay 2, 2017

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BugBase Predicts Organism Level Microbiome Phenotypes

Tonya Ward, Jake Larson, Jeremy Meulemans…·Dan Knights

BugBase assigns pathway coverage and traits (Gram stain, oxygen tolerance, pathogenicity) to individual taxa in 16S or shotgun microbiome data, detecting some functional differences bag-of-genes profiles miss.

491 citations

bacteria (other)human

𝕏 PostBluesky