Author

Yunfan Jin

Tsinghua UniversityORCID 0000-0001-6091-1218Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

Zhi John LuiD· 3 shared Hongli MaiD· 2 shared Pengfei BaoiD· 2 shared Zhenjiang Zech XuiD· 2 shared Fei Gan· 1 shared Jianwei MaiD· 1 shared Jiyun CuiiD· 1 shared Kebin LiuiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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3 shared papersBioinformatics

Zhi John LuORCID

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3 papers

Recent·Most cited

BioinformaticsMicrobiomePeer-reviewedJul 6, 2026

Conserved 3' Stem-Loop Structures Enable Comprehensive Analysis of Bacterial Transcription Termination in Metagenomes

Yunfan Jin, Jiyun Cui, Rulong Liu…·Zhenjiang Zech Xu

BATTER predicts bacterial transcript 3' ends by analyzing conserved stem-loop structures, revealing clade-specific properties and premature termination in AMR genes.

DOI 10.1186/s40168-026-02454-1

bacteria (other)metagenomics

𝕏 PostBluesky

BioinformaticsNature Computational SciencePeer-reviewedJun 24, 2025

RNA-ligand interaction scoring via data perturbation and augmentation modeling

Hongli Ma, Letian Gao, Yunfan Jin…·Zhi John Lu

RNAsmol is a sequence-based deep learning framework that predicts RNA-small molecule interactions using data perturbation and augmentation, achieving improved performance over existing methods.

22 citationstop 1%

deep learning

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Systems BiologyCell Reports MedicinePeer-reviewedNov 1, 2023

Cell-free multi-omics analysis reveals tumor status-informative signatures in gastrointestinal cancer patients' plasma

Yuhuan Tao, Shaozhen Xing, Shuai Zuo…·Zhi John Lu

The paper analyzes cell-free multi-omics data from gastrointestinal cancer patients to identify tumor status-informative signatures in plasma.

67 citationstop 1%

humanbulk RNA-seq

𝕏 PostBluesky