Author

Ilmars Kisis

University of CologneORCID 0000-0001-6207-3991Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:scRNA-seq· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Änne SchmitziD· 1 shared Filippo BeleggiaiD· 1 shared Gülce S. Gülcüler BaltaiD· 1 shared Laura M. BuchwaldiD· 1 shared Maike BoeckeriD· 1 shared Maria Adele RuegeriD· 1 shared Max AnstötziD· 1 shared Mira Kim Alves Carpinteiro· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Änne SchmitzORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintJul 3, 2026

Raw-count embeddings improve single-cell foundation models

Sebastian Schlede, Thulasi Priyadharshini Muruganandam, Santhosh Gojjam Kantharaju…·Filippo Beleggia

This study benchmarks preprocessing strategies for single-cell transformer models and finds that simple log-transformed counts outperform complex methods, leading to a more efficient foundation model.

DOI 10.64898/2026.06.29.735389

scRNA-seqtransformer / foundation model

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