Author

Yinqiao Yan

Beijing University of TechnologyORCID 0000-0001-6496-4536Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Assay:CITE-seq· 1 Research Focus:clustering· 1 Research Focus:dimensionality reduction· 1 Organism:human· 1

Frequent Co-Authors

Christopher P. LyiD· 1 shared Qunzhi XuiD· 1 shared Tian Le· 1 shared Xiangnan FengiD· 1 shared Xiangyu LuoiD· 1 shared Ye ZhengiD· 1 shared Zhicheng Luo· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 11 mutual co-author links

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1 shared paperBioinformatics

Christopher P. LyORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 1, 2026

Rank-Preserving Alignment Enables Cross-platform Learning and Phenotyping for Single-Cell and Spatial Proteomics

Qunzhi Xu, Tian Le, Zhicheng Luo…·Ye Zheng

RAMP improves cross-platform proteomics analysis by preserving protein expression order, enhancing cell-type annotation and prediction across multiple cancer types.

DOI 10.64898/2026.09.25.754510

humanCITE-seq

𝕏 PostBluesky

BioinformaticsBiometricsPeer-reviewedJul 3, 2025

Spatially Aware Adjusted Rand Index for Evaluating Spatial Transcriptomics Clustering

Yinqiao Yan, Xiangnan Feng, Xiangyu Luo

The paper introduces spARI, a spatially aware adjusted Rand index for evaluating spatial transcriptomics clustering, showing improved performance over traditional ARI in simulation and real datasets.

3 citations

spatial transcriptomicsstatistical model

𝕏 PostBluesky