Zichao Zeng

Rclade: automated taxonomic collapsing and geological-timescale annotation of time-calibrated phylogenetic trees in R

Rclade streamlines taxonomic collapsing and geological annotation of phylogenetic trees by integrating multiple functions into a single R package with improved rendering and format handling.

PyiTOL: reproducible Python workflows for iTOL annotation and taxonomic monophyly assessment

PyiTOL provides reproducible Python workflows for iTOL annotation and taxonomic monophyly assessment, with accurate results on benchmark datasets.

FigTreeKit: A Python toolkit for programmatic FigTree styling, taxonomy-aware clade auditing, and phylogenetic tree rendering

FigTreeKit provides a Python toolkit for programmatically styling and auditing phylogenetic trees, with scalability testing on large bacterial and archaeal datasets.