Zhuoran Xu

LongAllele jointly infers haplotypes and performs allele-specific analysis on long-read bulk and single-cell RNA-seq data, revealing context-dependent cis-regulatory effects and high-impact variants.

SCOTCH improves isoform-level gene expression characterization using long-read single-cell RNA sequencing by refining sub-exon boundaries and reducing false positives.

This study identifies multi-omics prognostic signatures for prostate cancer using transcriptomics and metabolomics data, showing their ability to stratify patients into distinct risk groups.

This study uses deep learning to predict chromosomal instability (CIN) in breast cancer from histopathology images, achieving an AUC of 0.822 in a test set.