Author

Shaika Chowdhury

Mayo ClinicORCID 0000-0001-6775-8623Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:drug response / drug discovery· 1 Approach:large language model· 1

Frequent Co-Authors

James R. CerhaniD· 1 shared Lichao SuniD· 1 shared Liewei WangiD· 1 shared Nansu ZongiD· 1 shared Ping YangiD· 1 shared Sivaraman RajaganapathyiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

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6 top collaborators · 15 mutual co-author links

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1 shared paperBioinformatics

James R. CerhanORCID

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1 paper

Recent·Most cited

SensitiveCancerGPT: Leveraging Generative Large Language Model on Structured Omics Data to Optimize Drug Sensitivity Prediction

Shaika Chowdhury, Sivaraman Rajaganapathy, Lichao Sun, Liewei Wang, Ping Yang, James R. Cerhan, Nansu Zong

This paper evaluates the use of GPT for drug sensitivity prediction using pharmacogenomics data, showing improved performance through prompt engineering and fine-tuning.

bioRxiv · Feb 27, 2025 · PreprintBioinformatics