Author

Afzal P Syed

German Cancer Research CenterORCID 0000-0001-6848-6762Unclaimed ORCID profile · follow to get notified of new preprints

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Afzal P Syed1 paper

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Assay:scATAC-seq· 2 Assay:scRNA-seq· 2 Research Focus:benchmarking· 1 Assay:CITE-seq· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1

Frequent Co-Authors

Isabelle SeufertiD· 2 shared Jan‐Philipp MallmiD· 2 shared Karsten RippeiD· 2 shared Anja Baumann· 1 shared Ezgi SeniD· 1 shared Hartmut DöhneriD· 1 shared Katharina BaueriD· 1 shared Konstanze DöhneriD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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2 shared papersBioinformatics

Isabelle SeufertORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMay 13, 2026

Disagreement between demultiplexing methods reveals structured cell quality gradients in multiplexed single-cell data

Ezgi Sen, Simon Steiger, Mislav Bašić…·Karsten Rippe

This paper introduces Split-flow, a pipeline that uses concordance between demultiplexing methods to classify cell quality in multiplexed single-cell data, revealing structured quality gradients.

DOI 10.64898/2026.05.10.724135

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Molecular BiologyFrontiers in Epigenetics and EpigenomicsPeer-reviewedNov 23, 2023

Enhancing sensitivity and versatility of Tn5 based single cell omics

Isabelle Seufert, Pooja Sant, Katharina Bauer…·Jan‐Philipp Mallm

This paper improves scATAC-seq by increasing Tn5 transposase activity and integrates chromatin and transcriptome data from the same cell.

10 citations

scATAC-seqscRNA-seq

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