Author

Ahmed Salah

University Medical Center of the Johannes Gutenberg University MainzORCID 0000-0001-7003-4466Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Biophysics· 3 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 4 Approach:statistical model· 4 Research Focus:differential expression· 3 Organism:human· 3 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

Fédérico MariniiD· 4 shared Sebastian ZahnreichiD· 4 shared Heinz SchmidbergeriD· 3 shared Daniel WollschlägeriD· 2 shared Maurizio CallariiD· 1 shared U. GieseniD· 1 shared

Activity by Year

2025-2026 · peak 3/yr

Co-Author Collaboration Network

6 top collaborators · 14 mutual co-author links

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4 shared papersBiophysics

Fédérico MariniORCID

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4 papers

Recent·Most cited

BiophysicsbioRxivPreprintSep 1, 2026

Comparative Transcriptional Responses of Human Blood to Neutron and Photon Irradiation

Ahmed Salah, Daniel Wollschläger, U. Giesen…·Sebastian Zahnreich

This study compares the transcriptional responses of human blood to neutron and photon irradiation, identifying gene signatures and RBE values to distinguish neutron exposure.

DOI 10.64898/2026.08.28.747800

humanbulk RNA-seq

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BiophysicsbioRxivPreprintAug 29, 2026

✦ In-depth digest

Decoding Radiation-Induced Transcriptomic Signatures of Human Leukocytes using Long-Read RNA-Seq: Clinical and Biodosimetric Implications

Ahmed Salah, Heinz Schmidberger, Fédérico Marini, Sebastian Zahnreich

Nanopore long-read RNA-seq of leukocytes from 4 Gy X-irradiated blood (three donors, 6 h) recovers p53 signaling and reveals isoform-level regulation plus candidate unannotated FBXO22/PHPT1 isoforms.

1 citation

humanlong-read sequencing

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BioinformaticsBioinformatics AdvancesPeer-reviewedJan 1, 2026

DoReMiTra: An R/Bioconductor data package for orchestrating the analysis of radiation transcriptomic studies

Ahmed Salah, Sebastian Zahnreich, Fédérico Marini

DoReMiTra provides a unified radiation transcriptomics dataset collection with standardized metadata and pre-processed data for benchmarking and integrative analysis.

DOI 10.1093/bioadv/vbag092

bulk RNA-seqDNA methylation

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BiophysicsScientific ReportsPeer-reviewedJun 5, 2025

Genome-wide transcriptomic response of whole blood to radiation

Ahmed Salah, Daniel Wollschläger, Maurizio Callari…·Sebastian Zahnreich

This study uses RNA-seq to analyze gene expression changes in human blood after X-ray exposure, identifying novel radiosensitive genes and pathways.

14 citationstop 2%

humanbulk RNA-seq

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