Author

Joseph B. Kelly

University of KonstanzORCID 0000-0001-7025-8806Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

J. B. Kelly3 papers

Biology Disciplines

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Genomics· 2 Ecology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:differential expression· 2 Assay:metagenomics· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1

Frequent Co-Authors

Lutz BecksiD· 2 shared David E. CarlsoniD· 1 shared David SchleheckiD· 1 shared Domiziana CristiniiD· 1 shared Harry LerneriD· 1 shared Jun Siong LowiD· 1 shared Niklas FutterknechtiD· 1 shared Pia Mahler· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersGenomics

Lutz BecksORCID

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3 papers

Recent·Most cited

GenomicsbioRxivPreprintMay 27, 2026

Convergent responses to light stress in oligohymenophorean ciliates bearing green algal symbionts

J. B. Kelly, Niklas Futterknecht, Sven Ernst, Lutz Becks

The paper investigates convergent cellular responses to light stress in three oligohymenophorean ciliates with green algal symbionts, identifying shared gene expression patterns across species.

DOI 10.64898/2026.05.24.727488

bulk RNA-seqstatistical model

𝕏 PostBluesky

EcologyLimnology and OceanographyPeer-reviewedSep 18, 2025

Seasonal genotypic and phenotypic differentiation of a cosmopolitan freshwater diatom

Domiziana Cristini, Joseph B. Kelly, Pia Mahler…·Lutz Becks

The paper investigates seasonal genotypic and phenotypic differentiation in Asterionella formosa, finding that seasonal shifts are driven by biotic interactions rather than environmental parameters.

DOI 10.1002/lno.70207

proteomicsmetagenomics

𝕏 PostBluesky

GenomicsbioRxivPreprintAug 31, 2020

Comparative metagenomics evidence distinct trends of genome evolution in sponge-dwelling bacteria and their pelagic counterparts

Joseph B. Kelly, David E. Carlson, Jun Siong Low, ROBERT W. THACKER

The paper compares metagenomic data of sponge-dwelling and pelagic bacteria to identify evolutionary trends in genome structure and function associated with sponge symbiosis.

2 citations

bacteria (other)metagenomics

𝕏 PostBluesky