Author

Julie M. Gastier

Nationwide Children's HospitalORCID 0000-0001-7141-8031Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:cell type annotation· 1

Frequent Co-Authors

HarshaVardhan DoddapaneniiD· 2 shared Alvin FarreliD· 1 shared Andrew D. CherniackiD· 1 shared Andrew J Mungall· 1 shared Andy Chu· 1 shared Anthony C. BryaniD· 1 shared Apexa ModiiD· 1 shared Ben LangmeadiD· 1 shared

Activity by Year

2017-2019 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersGenomics

HarshaVardhan DoddapaneniORCID

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3 papers

Recent·Most cited

GenomicsCell ReportsPeer-reviewedNov 1, 2019

Genomic profiling of childhood tumor patient-derived xenograft models to enable rational clinical trial design

Jo Lynne Rokita, Komal S. Rathi, Maria Cardenas…·John M. Maris

This paper genomically characterizes 261 pediatric cancer patient-derived xenograft models to guide rational clinical trial design and drug development.

173 citationstop 1%

humanwhole-genome sequencing

𝕏 PostBluesky

GenomicsiSciencePeer-reviewedMay 29, 2019

Samovar: Single-sample mosaic SNV calling with linked reads

Charlotte A. Darby, James Fitch, Patrick Joseph Brennan…·Michael C. Schatz

Samovar calls mosaic SNVs in single samples using linked-read data with accuracy comparable to trio or tumor/normal pair analyses.

11 citations

humanwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsCancer GeneticsPeer-reviewedJun 6, 2017

Comprehensive characterization of genomic, transcriptomic and epigenomic artifacts introduced in formalin-fixed, paraffin-embedded tissues.

Erik J. Zmuda, Kyle R Covington, Cyriac Kandoth…·Katherine A Hoadley

This study characterizes genomic, transcriptomic, and epigenomic artifacts in FFPE tissues and provides best practices to mitigate their impact on molecular analysis.

DOI 10.1016/j.cancergen.2017.04.029

humanwhole-exome sequencing

𝕏 PostBluesky