Author

Cyriac Kandoth

Memorial Sloan Kettering Cancer CenterPrimary ORCID profile (0000-0002-1345-3573 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Cyriac KandothiD1 paper · University of California, Los Angeles

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Approach:statistical model· 2 Assay:whole-exome sequencing· 2 Assay:DNA methylation· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Andre Kahles· 1 shared Andrew D. CherniackiD· 1 shared Andrew J Mungall· 1 shared Andy Chu· 1 shared Bob Fulton· 1 shared Bradley Murray· 1 shared Carolyn Hutter· 1 shared Carrie L. Sougnez· 1 shared

Activity by Year

2014-2017 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperCancer Biology

Andre Kahles

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2 papers

Recent·Most cited

Comprehensive characterization of genomic, transcriptomic and epigenomic artifacts introduced in formalin-fixed, paraffin-embedded tissues.

Erik J. Zmuda, Kyle R Covington, Cyriac Kandoth, Charlotte K.Y. Ng, Daniel J Weisenberger, Reanne Bowlby, Andy Chu, Richard Corbett, Denise Brooks, Andrew D. Cherniack, Bradley Murray, Shiyun Ling, Wei Zhao, Eve Shinbrot, Raymond S Lim, , Katherine A Hoadley

This study characterizes genomic, transcriptomic, and epigenomic artifacts in FFPE tissues and provides best practices to mitigate their impact on molecular analysis.

Cancer Genetics · Jun 6, 2017Peer-reviewedBioinformatics

Integrative Genome-wide Analysis of the Determinants of RNA Splicing in Kidney Renal Clear Cell Carcinoma

Kjong-Van Lehmann, Andre Kahles, Cyriac Kandoth, William Lee, Nikolaus Schultz, Oliver Stegle, Gunnar Rätsch

The paper analyzes RNA splicing patterns in kidney renal clear cell carcinoma patients to identify tumor-specific isoforms and splicing quantitative trait loci associated with disease.

bioRxiv · Oct 19, 2014Cancer Biology