Author

Jun Sung Park

European Bioinformatics InstituteORCID 0000-0001-7149-6769Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genetic & Genomic Medicine· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:differential expression· 2 Organism:human· 2 Assay:spatial transcriptomics· 2 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1

Frequent Co-Authors

Omer Ali BayraktariD· 3 shared Moritz GerstungiD· 2 shared Tong LiiD· 2 shared Adam GayosoiD· 1 shared Adam M. H. Young· 1 shared Alexander Aivazidis· 1 shared Alexis J. JoannidesiD· 1 shared Andrew J. KnightsiD· 1 shared

Activity by Year

2021-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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3 shared papersBioinformatics

Omer Ali BayraktarORCID

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4 papers

Recent·Most cited

Genetic & Genomic MedicineCancer Research and TreatmentPeer-reviewedSep 19, 2024

Target-enhanced whole-genome sequencing (TE-WGS) shows clinical validity equivalent to commercially available targeted oncology panel

Sangmoon Lee, Jin Roh, Jun Sung Park…·Minsuk Kwon

This study compares target-enhanced whole-genome sequencing (TE-WGS) with a commercial targeted panel, showing TE-WGS detects all variants and provides additional clinical insights.

4 citations

humanwhole-genome sequencing

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BioinformaticsNature BiotechnologyPeer-reviewedJan 13, 2022

Cell2location maps fine-grained cell types in spatial transcriptomics

Vitalii Kleshchevnikov, Artem Shmatko, Emma Dann…·Omer Ali Bayraktar

cell2location uses a Bayesian model to integrate single-cell and spatial transcriptomics, mapping cell types in situ across mouse brain regions and human lymph node immune compartments.

1,280 citationstop 1%

spatial transcriptomicsstatistical model

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BioinformaticsbioRxivPreprintOct 12, 2021

PoSTcode: Probabilistic image-based spatial transcriptomics decoder

Milana Gatarić, Jun Sung Park, Tong Li…·Moritz Gerstung

PoSTcode improves transcript decoding from spatial transcriptomic images by reducing mislabeling and doublet signals.

22 citations

spatial transcriptomicsstatistical model

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GenomicsNature GeneticsPeer-reviewedJun 1, 2021

A map of transcriptional heterogeneity and regulatory variation in human microglia

Adam M. H. Young, Natsuhiko Kumasaka, Fiona Calvert…·Daniel J. Gaffney

The paper profiles gene expression in human microglia from 141 patients, identifies population shifts in acute brain injury, maps eQTLs, and fine-maps Alzheimer's risk variants using hIPSC-derived macrophages.

213 citationstop 1%

humanscRNA-seq

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