Author

Shafin Rahman

North South UniversityORCID 0000-0001-7169-0318Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1 Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1 Assay:spatial transcriptomics· 1

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Eric A. StoneiD· 1 shared Md Zakir HossainiD· 1 shared Yan YangiD· 1 shared

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2023-2023 · peak 1/yr

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1 shared paperBioinformatics

Eric A. StoneORCID

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1 paper

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BioinformaticsPattern RecognitionPeer-reviewedSep 15, 2023

Spatial Transcriptomics Analysis of Gene Expression Prediction using Exemplar Guided Graph Neural Network

Yan Yang, Md Zakir Hossain, Eric A. Stone, Shafin Rahman

This paper introduces EGGN, an exemplar guided graph neural network for predicting gene expression from spatial transcriptomics tissue slide images, showing superior performance on benchmark datasets.

54 citationstop 3%

spatial transcriptomicsgraph neural network

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