Martin J. Sergeant

REgulamentary is a tool for cell-type specific annotation of cis-regulatory elements, outperforming existing methods and applied to GWAS data to prioritize causal variants.

ChatMDV provides a natural language interface for generating interactive visualizations of biological data using large language models and the MDV platform.

CREST-GV prioritizes disease-relevant cell types by analyzing genetic variants intersecting open chromatin regions across hundreds of cell types.

This study uses a virtual reality paradigm to show that breathlessness perception is influenced by both expected and actual effort during cycling.

MLV is a web-based tool for visualizing, analyzing, and annotating genomic datasets, enabling multi-scale interaction and integration of multiple data tracks.

LanceOtron improves peak calling in ATAC-seq, ChIP-seq, and DNase-seq by using deep learning to better capture peak shapes and outperforms MACS2 in selectivity and sensitivity.

The paper introduces a new method, NuTi Capture-C, that improves high-resolution chromosome conformation capture by reducing noise and increasing sequencing content, enabling reproducible genome-wide interaction profiles.

CaptureCompendium provides software tools to simplify the design, analysis, and visualization of 3C experiments, addressing the need for specialized bioinformatics skills in genome folding studies.

GrapeTree visualizes genomic relationships among 100,000 bacterial pathogens using a minimum spanning tree algorithm and interactive layouts.