Author

Wanxin Li

University of British ColumbiaORCID 0000-0001-7513-7368Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:dimensionality reduction· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Assay:metagenomics· 1

Frequent Co-Authors

Ashok PrasadiD· 1 shared Augustin LunaiD· 1 shared Benjamin E GrossiD· 1 shared Bülent Arman AksoyiD· 1 shared Caitlin O’CallaghaniD· 1 shared Carine LegrandiD· 1 shared Chris SanderiD· 1 shared Christian DallagoiD· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBioinformatics

Ashok PrasadORCID

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3 papers

Recent·Most cited

BioinformaticsFrontiers in BioinformaticsPeer-reviewedAug 10, 2023

Orthogonal outlier detection and dimension estimation for improved MDS embedding of biological datasets

Wanxin Li, Jules Mirone, Ashok Prasad…·Khanh Dao Duc

This paper introduces DeCOr-MDS, a robust MDS method that detects and corrects orthogonal outliers to improve embedding quality in biological datasets.

3 citations

bulk RNA-seqspatial transcriptomics

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJan 12, 2022

MT-MAG: Accurate and interpretable machine learning for complete or partial taxonomic assignments of metagenome-assembled genomes

Wanxin Li, Lila Kari A, Yaoliang Yu, Laura A. Hug

MT-MAG is a machine learning tool for taxonomic classification of MAGs, achieving high accuracy and providing interpretable results for complete or partial classifications.

DOI 10.1101/2022.01.12.475159

metagenomicsmachine learning (classical)

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BioinformaticsNucleic Acids ResearchPeer-reviewedOct 10, 2019

Pathway Commons: 2019 Update

Igor V. Rodchenkov, Özgün Babur, Augustin Luna…·Chris Sander

Pathway Commons updates its resource with integrated pathway data, tools, and software for biological pathway analysis.

311 citationstop 1%

humanprotein structure

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