Author

Markus Fleischauer

Friedrich Schiller University JenaORCID 0000-0001-7557-0831Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 5

Signature Assays, Organisms & Methods

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Assay:metabolomics· 5 Approach:statistical model· 4 Research Focus:database / resource· 2 Organism:plant (other)· 2 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1

Frequent Co-Authors

Kai DührkopiD· 5 shared Louis-Félix Nothias-ScagliaiD· 5 shared Marcus LudwigiD· 5 shared Pieter C. DorresteiniD· 5 shared Sebastian BöckeriD· 5 shared Daniel PetrasiD· 3 shared Martin HoffmanniD· 3 shared Anupriya TripathiiD· 2 shared

Activity by Year

2020-2021 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 44 mutual co-author links

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5 shared papersBioinformatics

Kai DührkopORCID

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5 papers

Recent·Most cited

BioinformaticsNature BiotechnologyPeer-reviewedOct 14, 2021

Assigning confidence to structural annotations from mass spectra with COSMIC

Martin Hoffmann, Louis-Félix Nothias-Scaglia, Marcus Ludwig…·Sebastian Böcker

COSMIC assigns confidence to structural annotations from mass spectra by combining database generation, in silico annotation, and a confidence score, outperforming existing methods and annotating novel structures.

388 citationstop 1%

humanmetabolomics

𝕏 PostBluesky

BioinformaticsNature BiotechnologyPeer-reviewedNov 23, 2020

Classes for the masses: Systematic classification of unknowns using fragmentation spectra

Kai Dührkop, Louis-Félix Nothias-Scaglia, Markus Fleischauer…·Sebastian Böcker

CANOPUS is a tool that predicts compound classes from fragmentation spectra, enabling annotation of unknown compounds without reference data.

859 citationstop 1%

mouseplant (other)

𝕏 PostBluesky

BioinformaticsNature Chemical BiologyPeer-reviewedNov 16, 2020

Chemically-informed Analyses of Metabolomics Mass Spectrometry Data with Qemistree

Anupriya Tripathi, Yoshiki Vázquez‐Baeza, Julia M. Gauglitz…·Pieter C. Dorrestein

The paper introduces Qemistree, a method for analyzing metabolomics mass spectrometry data using hierarchical molecular fingerprints and chemical ontologies to explore chemical composition.

115 citationstop 2%

metabolomicsstatistical model

𝕏 PostBluesky

BioinformaticsNature Machine IntelligencePeer-reviewedOct 13, 2020

ZODIAC: database-independent molecular formula annotation using Gibbs sampling reveals unknown small molecules

Marcus Ludwig, Louis-Félix Nothias-Scaglia, Kai Dührkop…·Sebastian Böcker

ZODIAC improves molecular formula annotation in metabolomics by combining SIRIUS results with Gibbs sampling, reducing errors and discovering novel compounds.

242 citationstop 1%

plant (other)metabolomics

𝕏 PostBluesky

BioinformaticsNature MethodsPeer-reviewedAug 24, 2020

Feature-based Molecular Networking in the GNPS Analysis Environment

Louis-Félix Nothias-Scaglia, Daniel Petras, Robin Schmid…·Pieter C. Dorrestein

The paper introduces FBMN, a method for improving molecular networking by enhancing quantitative analysis and isomer distinction using feature detection and alignment tools in the GNPS platform.

1,660 citationstop 1%

metabolomicsstatistical model

𝕏 PostBluesky