Author

Thomas Baudeau

Centre National de la Recherche ScientifiqueORCID 0000-0001-7601-8467Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:long-read sequencing· 2 Approach:statistical model· 2 Research Focus:software / tool· 1 Organism:virus· 1

Frequent Co-Authors

Camille MarchetiD· 2 shared Bastien CazauxiD· 1 shared Kristoffer SahliniD· 1 shared Mikaël SalsoniD· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

4 top collaborators · 4 mutual co-author links

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2 shared papersBioinformatics

Camille MarchetORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 25, 2024

Assessing Long-Read Mappers for Viral Genomics

Thomas Baudeau, Camille Marchet, Mikaël Salson

This study evaluates eight long-read mapping tools for viral genomic data, finding that most struggle with read edges and performance decreases with default settings.

DOI 10.1101/2024.11.25.625163

viruslong-read sequencing

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMay 21, 2022

A survey of mapping algorithms in the long-reads era

Kristoffer Sahlin, Thomas Baudeau, Bastien Cazaux, Camille Marchet

This paper surveys long-read mapping algorithms, highlighting their evolution from seed-and-extend to seed-and-chain frameworks and introduces a visualization tool for parameter settings.

9 citations

long-read sequencingstatistical model

𝕏 PostBluesky