Terry M. Casstevens

rTASSEL: an R interface to TASSEL for association mapping of complex traits

rTASSEL provides an R interface to TASSEL for association mapping, offering faster performance than other R packages for genomic analyses.

The Practical Haplotype Graph, a platform for storing and using pangenomes for imputation

The paper introduces the Practical Haplotype Graph (PHG) platform for storing and using pangenomes, demonstrating its effectiveness in imputing genomes from low-coverage data in crops like maize.

Predicting protein domain temperature adaptation across the prokaryote-eukaryote divide

The paper develops models to predict protein temperature adaptation across prokaryotes and eukaryotes, finding site-specific models best transfer across the divide.

A sorghum Practical Haplotype Graph facilitates genome-wide imputation and cost-effective genomic prediction

This paper introduces a sorghum Practical Haplotype Graph (PHG) that enables accurate SNP calling and imputation from low-coverage sequencing data, improving genomic prediction accuracy and reducing genotyping costs.