Sarah E. Jensen

The paper introduces the Practical Haplotype Graph (PHG) platform for storing and using pangenomes, demonstrating its effectiveness in imputing genomes from low-coverage data in crops like maize.

The paper develops models to predict protein temperature adaptation across prokaryotes and eukaryotes, finding site-specific models best transfer across the divide.

The paper develops a model using tRNA sequences to predict optimal growth temperature (OGT) for microbes, achieving high accuracy with minimal input data.

This paper introduces a sorghum Practical Haplotype Graph (PHG) that enables accurate SNP calling and imputation from low-coverage sequencing data, improving genomic prediction accuracy and reducing genotyping costs.