High-Coverage Four-Dimensional Data-Independent Acquisition Proteomics and Phosphoproteomics Enabled by Deep Learning-Driven Multi-Dimensional Prediction
Moran Chen, Pujia Zhu, Pengfei Wu, Yanhong Hao, Zhourui Zhang, Jian Ping Sun, Wenjing Nie, Suming Chen
This paper develops a deep learning model to predict peptide properties for 4D DIA proteomics, improving protein and phosphorylated protein identification in HeLa cells.
bioRxiv · Jun 12, 2022 · PreprintBioinformatics