Author

Paramita Basak Upama

Marquette UniversityORCID 0000-0001-7717-5843Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Assay:DNA methylation· 2 Organism:human· 2 Assay:long-read sequencing· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Shayori Bose· 2 shared Sheikh Iqbal AhamediD· 2 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

2 top collaborators · 1 mutual co-author link

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2 shared papersBioinformatics

Shayori Bose

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 28, 2026

Multiplex-GCN Predicts Clinically Actionable Tumor Microenvironment Subtypes in Pancreatic Cancer

Shayori Bose, Paramita Basak Upama, Sheikh Iqbal Ahamed

The paper develops a multi-layered GCN to identify TME-guided PDAC subtypes, revealing seven subtypes with distinct molecular and prognostic features.

DOI 10.64898/2026.10.22.761275

humanbulk RNA-seq

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BioinformaticsbioRxivPreprintDec 12, 2025

Unraveling miRNA-Driven DNA Damage Response Networks in Pancreatic Adenocarcinoma: A Multi-Omics and Machine Learning Approach

Shayori Bose, Paramita Basak Upama, Sheikh Iqbal Ahamed

The paper uses multi-omics data and machine learning to identify miRNA-DDR gene interactions in PAAD, revealing miRNAs correlated with patient outcomes and potential targets for precision oncology.

DOI 10.64898/2025.12.09.693279

humanbulk RNA-seq

𝕏 PostBluesky