Paolo Cazzaniga

SMGen generates synthetic biochemical reaction network models for benchmarking, showing it can create models with 512 species and reactions in under 7 seconds.

FiCoS is a GPU-powered deterministic simulator for biochemical networks that provides fine- and coarse-grained parallelization, achieving up to 855x speedup over CPU-based simulators.

ACDC automates cell detection and counting in time-lapse microscopy images, achieving high accuracy without large annotated datasets.