Author

Jianfei Qi

University of Maryland, BaltimoreORCID 0000-0001-7884-7656Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:Bayesian inference· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

Hongjie Ke· 2 shared Tianzhou MaiD· 2 shared Eric Li· 1 shared Feng Li· 1 shared George C. TsengiD· 1 shared Menglu LiangiD· 1 shared Rong Pan· 1 shared Shuo CheniD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

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10 top collaborators · 30 mutual co-author links

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2 shared papersBioinformatics

Hongjie Ke

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintApr 10, 2025

Inferring non-coding RNA regulatory network from transcriptomic data and curated databases

Hongjie Ke, Zhenyao Ye, Feng Li…·Tianzhou Ma

The paper introduces CAR-NET, a framework for inferring non-coding RNA regulatory networks using transcriptomic data and curated databases, showing its effectiveness in simulations and case studies.

1 citation

bulk RNA-seqscRNA-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintFeb 21, 2022

High-dimension to high-dimension screening for detecting genome-wide epigenetic regulators of gene expression

Hongjie Ke, Zhao Ren, Shuo Chen…·Tianzhou Ma

The paper introduces a screening method to identify genome-wide epigenetic regulators of gene expression by reducing dimensionality in both predictors and responses.

DOI 10.1101/2022.02.21.481160

DNA methylationstatistical model

𝕏 PostBluesky