Author

Shuqing Sun

Tsinghua Shenzhen International Graduate SchoolORCID 0000-0001-7906-2885Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Research Focus:drug response / drug discovery· 1 Organism:human· 1

Frequent Co-Authors

Huan XuiD· 2 shared Qiang Shawn ChengiD· 2 shared Shuang GeiD· 2 shared Zhixiang ReniD· 2 shared Mingqing WangiD· 1 shared Qiming He· 1 shared Yaxin XuiD· 1 shared Yi ReniD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 36 mutual co-author links

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2 shared papersBioinformatics

Huan XuORCID

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2 papers

Recent·Most cited

PROTOTYPE-BASED CONTINUAL CELL-TYPE ANNOTATION REVEALS CELLULAR STATE TRANSITIONS IN EXPANDING SINGLE-CELL ATLASES

Shuang Ge, Qiming He, Yi Ren, Yaxin Xu, Mingqing Wang, Zhiwei Nie, Huan Xu, Qiang Shawn Cheng, Shuqing Sun, Zhixiang Ren

scEvolver enables continual cell-type annotation across expanding single-cell atlases, revealing cellular state transitions in disease contexts.

bioRxiv · Jul 26, 2026 · PreprintBioinformatics

A Multi-Modal Genomic Knowledge Distillation Framework for Drug Response Prediction

Shuang Ge, Shuqing Sun, Huan Xu, Qiang Shawn Cheng, Zhixiang Ren

This paper proposes a framework that transfers knowledge from multi-modal genomic data to gene expression-only models to improve drug response prediction.

Applied Intelligence · Jul 22, 2025Peer-reviewedBioinformatics