Author

María Eugenia Pachón-Ibáñez

Instituto de Salud Carlos IIIORCID 0000-0001-7969-8162Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 2 Approach:statistical model· 2 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Research Focus:phylogenetics / evolution· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Alejandro RubioiD· 2 shared Andrés GarzóniD· 2 shared Antonio J. Pérez‐PulidoiD· 2 shared Antonio Moreno-RodrígueziD· 2 shared Jerónimo PachóniD· 2 shared Elisa Luque-Jiménez· 1 shared Juan Antonio Marqués-HinojosaiD· 1 shared Lucía Ceballos-Romero· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersMicrobiology

Alejandro RubioORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

MicrobiologybioRxivPreprintOct 12, 2026

Evolutionary expansion of the bacterial ompW gene family enables functional diversification during host adaptation

Alejandro Rubio, Antonio Moreno-Rodríguez, Lucía Ceballos-Romero…·Antonio J. Pérez‐Pulido

This study shows that the bacterial ompW gene family expands through duplication and horizontal transfer, enabling functional diversification during host adaptation.

DOI 10.64898/2026.10.09.757860

bacteria (other)statistical model

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BioinformaticsScience AdvancesPeer-reviewedMar 24, 2023

Reducing CRISPR dark matter reveals a strong association between the bacterial membranome and CRISPR-Cas systems

Alejandro Rubio, Maximilian Sprang, Andrés Garzón…·Antonio J. Pérez‐Pulido

The paper reduces CRISPR dark matter by analyzing spacers in antibiotic-resistant bacterial genomes and links CRISPR-Cas systems to membrane proteins involved in phage defense.

15 citations

bacteria (other)whole-genome sequencing

𝕏 PostBluesky