Author

Burak Berk Üstündağ

Istanbul Technical UniversityORCID 0000-0001-8143-9434Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Research Focus:drug response / drug discovery· 2 Research Focus:protein structure prediction· 2 Approach:statistical model· 2 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Assay:protein sequence· 1 Assay:protein structure· 1

Frequent Co-Authors

Jacob RodrigueziD· 2 shared Jonathan Francis-LandauiD· 2 shared Siddharth S. RathiD· 2 shared Mehmet Sarikaya· 1 shared Mehmet SarıkayaiD· 1 shared Oliver Nakano-BakeriD· 1 shared Ximing LuiD· 1 shared Yekta Demirci· 1 shared

Activity by Year

2019-2019 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 22 mutual co-author links

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2 shared papersBioinformatics

Jacob RodriguezORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintAug 19, 2019

A Generalized Similarity Metric for Peptide Binding Affinity Prediction

Jacob Rodriguez, Siddharth S. Rath, Jonathan Francis-Landau…·Mehmet Sarikaya

This paper introduces a generalized similarity metric, the Total Similarity Score, to predict peptide binding affinity by benchmarking it on peptide-protein datasets.

2 citations

proteomicsstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMay 31, 2019

VSEPRnet: Physical structure encoding of sequence-based biomolecules for functionality prediction: Case study with peptides

Siddharth S. Rath, Jonathan Francis-Landau, Ximing Lu…·Mehmet Sarıkaya

The paper introduces VSEPRnet, a method to encode biomolecule structures for functionality prediction, demonstrating improved accuracy in predicting peptide-MHC binding affinities.

2 citations

protein sequenceprotein structure

𝕏 PostBluesky