Stefan S. Ivanovic

The paper introduces a framework to summarize RNA structural ensembles by identifying shared motifs and clustering structures, showing it can find conserved scaffolds and motifs across species and transcripts.

This paper improves genomic prediction accuracy by using synthetic traits derived from hyperspectral data, showing higher accuracy than single-trait models for leaf traits in sorghum.

DeepCopy improves haplotype-specific copy number calling in single-cell DNA sequencing by incorporating evolutionary constraints, leading to more accurate and biologically plausible CNA phylogenies.

UPP2 improves alignment accuracy for large datasets with sequence length heterogeneity by reducing runtime while maintaining accuracy comparable to UPP.