Author
Chinese Academy of SciencesORCID 0000-0001-8283-7274Unclaimed ORCID profile · follow to get notified of new preprints
7 papers
Recent·Most cited
Junpeng Zhang, Lin Liu, Taosheng Xu…·Thuc Duy Le
The paper introduces CSmiR, a method to identify cell-specific miRNA-mRNA regulatory networks using single-cell co-sequencing data, revealing unique miRNA regulation in individual cells.
Xiaomei Li, Lin Liu, Gregory J. Goodall…·Thuc Duy Le
This paper introduces scPrognosis, a method using scRNA-seq data to improve breast cancer prognosis by analyzing EMT-related gene expression dynamics, outperforming bulk RNA-seq based methods.
Junpeng Zhang, Taosheng Xu, Lin Liu…·Thuc Duy Le
LMSM identifies lncRNA-related miRNA sponge modules in breast cancer using heterogeneous data, finding subtype-specific modules and improved classification performance over baselines.
Junpeng Zhang, Vu Pham, Lin Liu…·Thuc Duy Le
The paper introduces miRsyn, a causal inference framework to identify miRNA synergism using observational data, finding that many miRNA pairs with shared targets do not synergize at the expression level.
Junpeng Zhang, Lin Liu, Taosheng Xu…·Thuc Duy Le
miRspongeR is an R/Bioconductor package that identifies and analyzes miRNA sponge interaction networks and modules using seven methods and an integrative approach.
Vu Pham, Junpeng Zhang, Lin Liu…·Thuc Duy Le
This paper identifies miRNA-mRNA regulatory relationships in breast cancer using invariant causal prediction and shows improved performance over existing methods.
Taosheng Xu, Ning Su, Lin Liu…·Thuc Duy Le
miRBaseConverter provides tools to convert and retrieve miRNA information across miRBase versions, addressing inconsistencies in miRNA data.