Author

Reed Woyda

Colorado State UniversityORCID 0000-0001-8366-4758Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:database / resource· 1 Assay:metagenomics· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Adelumola OladeindeiD· 3 shared Zaid AbdoiD· 3 shared Dinku M. EndaleiD· 2 shared Jodie Plumblee LawrenceiD· 2 shared Timothy C. StricklandiD· 2 shared Bridget B. McGiverniD· 1 shared Kelly C. WrightoniD· 1 shared Rory M. FlynniD· 1 shared

Activity by Year

2020-2023 · peak 3/yr

Co-Author Collaboration Network

8 top collaborators · 13 mutual co-author links

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3 shared papersGenomics

Adelumola OladeindeORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

CAMPER: curated annotations for profiling microbial polyphenol metabolic potential

Bridget B. McGivern, Reed Woyda, Rory M. Flynn, Kelly C. Wrighton

CAMPER annotates and summarizes polyphenol metabolism genes by combining custom and database searches to improve microbial carbon cycling analysis.

bioRxiv · Sep 24, 2023 · PreprintBioinformatics

Management factors influence Salmonella persistence in reused poultry litter over three successive flocks

Reed Woyda, Adelumola Oladeinde, Dinku M. Endale, Timothy C. Strickland, Jodie Plumblee Lawrence, Zaid Abdo

This study examines how management practices affect Salmonella persistence in poultry litter across three flocks, finding that copper sulfate may select for metal-resistant strains.

bioRxiv · Mar 3, 2023 · PreprintGenomics

Broiler house environment and litter management practices impose selective pressures on antimicrobial resistance genes and virulence factors of Campylobacter

Reed Woyda, Adelumola Oladeinde, Dinku M. Endale, Timothy C. Strickland, Jodie Plumblee Lawrence, Zaid Abdo

The paper examines how broiler house environments and litter management practices influence antimicrobial resistance and virulence factors in Campylobacter isolates from chicken flocks.

bioRxiv · Feb 2, 2023 · PreprintGenetics

Reads2Resistome: An adaptable and high-throughput whole-genome sequencing pipeline for bacterial resistome characterization

Reed Woyda, Adelumola Oladeinde, Zaid Abdo

Reads2Resistome is a high-throughput whole-genome sequencing pipeline that assembles and annotates bacterial genomes to characterize the resistome using long or short reads.

bioRxiv · May 18, 2020 · PreprintBioinformatics