Author

Alyssa Blackburn

Baylor College of MedicineORCID 0000-0001-8449-6434Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:ATAC-seq· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Assay:Hi-C· 1 Organism:human· 1

Frequent Co-Authors

David WeisziD· 2 shared Erez Lieberman AideniD· 2 shared Neva C. DurandiD· 2 shared Olga DudchenkoiD· 2 shared Ragini MahajaniD· 2 shared Suhas S.P. RaoiD· 2 shared Alexander DobiniD· 1 shared Ali MortazaviiD· 1 shared

Activity by Year

2023-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 42 mutual co-author links

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2 shared papersGenomics

David WeiszORCID

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2 papers

Recent·Most cited

GenomicsPLoS ONEPeer-reviewedNov 30, 2023

A rapid, low cost, and highly sensitive SARS-CoV-2 diagnostic based on whole genome sequencing

Per A. Adastra, Neva C. Durand, Namita Mitra…·Aviva Presser Aiden

This paper introduces a low-cost, high-throughput method for SARS-CoV-2 detection using whole genome sequencing, achieving high sensitivity and accuracy comparable to clinical tests.

37 citations

viruswhole-genome sequencing

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BioinformaticsbioRxivPreprintApr 4, 2023

✦ In-depth digest

The ENCODE Uniform Analysis Pipelines

Benjamin C. Hitz, Jin-Wook Lee, Otto Jolanki…·J. Michael Cherry

ENCODE's containerised Workflow Description Language pipelines for ChIP-seq, ATAC-seq, DNase-seq, RNA-seq variants, Hi-C and bisulfite sequencing run on cloud or local clusters, with documented compute costs and provenance.

149 citations

humanmouse

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