Author

Oscar Clivio

École nationale des ponts et chausséesORCID 0000-0001-8668-4535Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Assay:scRNA-seq· 2 Approach:Bayesian inference· 1 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1 Organism:mouse· 1

Frequent Co-Authors

Adam GayosoiD· 2 shared Jeffrey RegieriD· 2 shared Michael I. JordaniD· 2 shared Nir YosefiD· 2 shared Romain LopeziD· 2 shared Aaron StreetsiD· 1 shared Achille NazaretiD· 1 shared Carlos N. Talavera-LópeziD· 1 shared

Activity by Year

2019-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Adam GayosoORCID

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2 papers

Recent·Most cited

BioinformaticsNature BiotechnologyPeer-reviewedFeb 1, 2022

scvi-tools: a library for deep probabilistic analysis of single-cell omics data

Adam Gayoso, Romain Lopez, Galen K. Xing…·Nir Yosef

scvi-tools provides a Python package for probabilistic analysis of single-cell omics data, offering standardized interfaces and extensible tools for various analysis tasks.

819 citationstop 1%

scRNA-seqstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintNov 29, 2019

Detecting Zero-Inflated Genes in Single-Cell Transcriptomics Data

Oscar Clivio, Romain Lopez, Jeffrey Regier…·Nir Yosef

AutoZI detects gene-specific zero-inflation in single-cell RNA sequencing data using a spike-and-slab prior and variational inference, outperforming existing methods on simulated and real data.

12 citations

mousescRNA-seq

𝕏 PostBluesky