Tyler K. Chafin

SNaQ.jl improves scalability for phylogenetic network inference by enhancing computational efficiency without altering method accuracy.

autoStreamTree fits genomic variation to geospatial networks, demonstrating its use in analyzing genetic variation in Speckled Dace.

ClinePlotR visualizes genomic clines and detects outlier loci using outputs from two software packages, enhancing reproducibility and accessibility of cline analysis methods.

ADMIXPIPE processes large non-model organism datasets to infer population structure and optimal K-values for ADMIXTURE analysis.

FGTpartitioner rapidly and accurately partitions large genome alignments into ancestry blocks without requiring haplotype phasing, enabling efficient phylogenomic analysis of non-model organisms.

The paper quantifies the geographic distribution of PRNP variants in white-tailed deer to assess CWD susceptibility and management implications.