Author

Karen Brengel-Pesce

bioMerieuxORCID 0000-0001-8795-0647Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Alison H. HolmesiD· 1 shared Anirudhha Hazarika· 1 shared Jesus Rodriguez-ManzanoiD· 1 shared Karolina Sobala· 1 shared Ke XuiD· 1 shared Kenny Malpartida-CardenasiD· 1 shared Laurent Drazek· 1 shared Louis KreitmanniD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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1 shared paperMolecular Biology

Alison H. HolmesORCID

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1 paper

Recent·Most cited

Molecular BiologybioRxivPreprintNov 6, 2026

Stoichiometric Encoding of Amplification Kinetics Enables High-Level Multiplexing in Single-Channel TaqMan Real-Time PCR

Louis Kreitmann, Kenny Malpartida-Cardenas, Ye Mao…·Jesus Rodriguez-Manzano

This paper introduces a method to increase multiplexing in TaqMan qPCR by encoding target-specific information into amplification curves and decoding them with a transformer model, achieving 8-plex detection with high accuracy.

DOI 10.64898/2026.11.05.764713

bulk RNA-seqdeep learning

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