Author

Shyamasree Saha

European Bioinformatics InstituteORCID 0000-0001-8867-1770Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Aravind VenkatesaniD· 2 shared Johanna McEntyreiD· 2 shared Santosh TirunagariiD· 2 shared Annalisa BunielloiD· 1 shared Dániel SüvegesiD· 1 shared David OchoaiD· 1 shared Ellen M. McDonaghiD· 1 shared Melissa HarrisoniD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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2 shared papersBioinformatics

Aravind VenkatesanORCID

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2 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedMar 13, 2025

Lit-OTAR Framework for Extracting Biological Evidences from Literature

Santosh Tirunagari, Shyamasree Saha, Aravind Venkatesan…·Melissa Harrison

The paper introduces a framework for extracting biological evidence from literature to aid drug discovery, identifying millions of associations between targets, diseases, and drugs.

10 citations

deep learningdatabase / resource

𝕏 PostBluesky

BioinformaticsScientific DataPeer-reviewedOct 19, 2023

Europe PMC Annotated Full-text Corpus for Gene/Proteins, Diseases and Organisms

Xiao Jing Yang, Shyamasree Saha, Aravind Venkatesan…·Johanna McEntyre

The paper introduces a human-annotated full-text corpus for biomedical entities, including genes, proteins, diseases, and organisms, to support deep learning approaches in NLP.

14 citations

deep learningbenchmarking

𝕏 PostBluesky