Kavya Vaddadi

The paper introduces an impute-first alignment framework that improves variant calling accuracy and efficiency by using a personalized diploid reference.

The paper introduces rowbowt, a tool for pangenomic genotyping using a marker array to improve accuracy and efficiency over existing methods.

This paper introduces V-ALIGN, a new sequence alignment algorithm for directed graphs that avoids DAGification steps, improving efficiency for aligning sequences on genomic variation graphs.