Author

Signe Modvig

University of CopenhagenORCID 0000-0001-9113-1097Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 2 Assay:CITE-seq· 2 Approach:benchmark study· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:imputation· 1 Approach:statistical model· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Frederik KirkiD· 2 shared Lars Rønn OlseniD· 2 shared Andrea SonnenholzneriD· 1 shared Helene Scheel Wegener· 1 shared Javier Herranz del Cerro· 1 shared Konstantin IvanoviD· 1 shared Merja HeinäniemiiD· 1 shared Mouhamad Al Moussawy· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Frederik KirkORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJun 30, 2026

CyStainer: A transformer-based variational autoencoder for robust marker imputation in high-parameter cytometry

Konstantin Ivanov, Mouhamad Al Moussawy, Frederik Kirk…·Merja Heinäniemi

CyStainer imputes markers in high-parameter cytometry data without shared markers, outperforming existing methods in panel merging and dataset integration.

DOI 10.64898/2026.06.30.735235

CITE-seqbulk RNA-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJun 5, 2026

A Reproducible and Extensible Benchmark of Supervised Cell Type Annotation Tools for Cytometry Data

Frederik Kirk, Andrea Sonnenholzner, Helene Scheel Wegener…·Lars Rønn Olsen

This paper benchmarks supervised cell type annotation tools for cytometry data using a reproducible framework, showing performance varies across datasets and populations, with rare populations being a challenge.

DOI 10.64898/2026.06.02.729500

CITE-seqstatistical model

𝕏 PostBluesky