Author

Helene Scheel Wegener

Technical University of Denmark

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Assay:CITE-seq· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Lars Rønn OlseniD· 2 shared Andrea SonnenholzneriD· 1 shared Benito CamposiD· 1 shared Binay PandaiD· 1 shared Christina Bligaard PederseniD· 1 shared Frederik KirkiD· 1 shared Frederik Otzen BaggeriD· 1 shared Javier Herranz del Cerro· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersBioinformatics

Lars Rønn OlsenORCID

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2 papers

Recent·Most cited

A Reproducible and Extensible Benchmark of Supervised Cell Type Annotation Tools for Cytometry Data

Frederik Kirk, Andrea Sonnenholzner, Helene Scheel Wegener, Javier Herranz del Cerro, Signe Modvig, Lars Rønn Olsen

This paper benchmarks supervised cell type annotation tools for cytometry data using a reproducible framework, showing performance varies across datasets and populations, with rare populations being a challenge.

bioRxiv · Jun 5, 2026 · PreprintBioinformatics

Building flexible and robust analysis frameworks for molecular subtyping of cancers

Christina Bligaard Pedersen, Benito Campos, Lasse Rene, Helene Scheel Wegener, Neeraja M. Krishnan, Binay Panda, Kristoffer Vitting‐Seerup, Maria Rossing, Frederik Otzen Bagger, Lars Rønn Olsen

The paper provides a framework for molecular cancer subtyping that integrates quality control, normalization, batch correction, classification, and reporting, with a use case in breast cancer.

Molecular Oncology · Dec 30, 2023Peer-reviewedBioinformatics