Author

Nilson Da Rocha Coimbra

Brazilian Center for Research in Energy and MaterialsORCID 0000-0001-9407-4761Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Molecular Biology· 2 Bioinformatics· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Assay:proteomics· 3 Research Focus:cell type annotation· 2 Research Focus:clustering· 2 Approach:deep learning· 2 Approach:statistical model· 2 Assay:CITE-seq· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Adriana Franco Paes LemeiD· 3 shared Jackson Gabriel MiyamotoiD· 3 shared Ana Carolina Prado RibeiroiD· 2 shared Ana Letícia MoresiD· 2 shared Ariane Fidelis Busso-LopesiD· 2 shared Bianca Alves PaulettiiD· 2 shared Daniella de FigueiredoiD· 2 shared Luiz Paulo KowalskiiD· 2 shared

Activity by Year

2019-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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Curved chords = mutual co-authorship

3 shared papersMolecular Biology

Adriana Franco Paes LemeORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Molecular BiologybioRxivPreprintNov 9, 2026

SeekNSee: A Rule-Based Framework for Prioritizing Proteotypic Peptides

Mauricio Frota Camacho, Guilherme Pauperio Lanfredi, Adriana Paes Leme…·Jackson Gabriel Miyamoto

SeekNSee prioritizes proteotypic peptides using a rule-based framework, generating 733,864 candidates from the human proteome with traceable decisions and validated performance.

DOI 10.64898/2026.11.07.764955

humanproteomics

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Molecular BiologyCell Reports MethodsPeer-reviewedOct 1, 2026

Single-cell proteomics workflow for characterizing heterogeneous cell populations in saliva and tear fluid

Heloísa Monteiro do Amaral-Prado, Jackson Gabriel Miyamoto, Daniella de Figueiredo…·Adriana Franco Paes Leme

This study develops a single-cell proteomics workflow to analyze cellular heterogeneity in saliva and tear fluid, identifying biomarkers and therapeutic targets.

4 citations

humanproteomics

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Cancer BiologybioRxivPreprintSep 10, 2026

Single-cell proteomics maps circulating monocyte dynamics in advanced head and neck squamous cell carcinoma

Heloísa Monteiro do Amaral Prado, Jackson Gabriel Miyamoto, Ariane Fidelis Busso-Lopes…·Adriana Franco Paes Leme

The paper uses single-cell proteomics to analyze circulating immune cells in HNSCC patients, revealing proteomic changes in monocytes during metastasis.

DOI 10.64898/2026.09.08.750082

humanCITE-seq

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BioinformaticsBMC BioinformaticsPeer-reviewedJul 15, 2019

RAFTS3G - An efficient and versatile clustering software to analyses in large protein datasets

Bruno Thiago de Lima Nichio, Aryel Marlus Repula de Oliveira, Camilla Reginatto De Pierri…·Roberto Tadeu Raittz

RAFTS3G is a clustering tool for protein datasets that is faster than CD-HIT and better at detecting low-similarity homology.

6 citations

protein sequencestatistical model

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