Single-cell proteomics maps circulating monocyte dynamics in advanced head and neck squamous cell carcinoma
Heloísa Monteiro do Amaral PradoiD, Jackson Gabriel MiyamotoiD, Ariane Fidelis Busso-LopesiD, Nilson Da Rocha CoimbraiD, Daniella de FigueiredoiD, Romênia R. DominguesiD, Bianca Alves PaulettiiD, Ana Letícia MoresiD, Tiago da Silva MedinaiD, Rodrigo Nalio RamosiD, Thaís Bianca BrandãoiD, Ana Carolina Prado RibeiroiD, Luiz Paulo KowalskiiD, Adriana Franco Paes LemeiD
Abstract
It remains unclear whether metastatic progression in head and neck squamous cell carcinoma (HNSCC) is accompanied by functional remodeling of circulating immune cells at the proteome level. To address this question, we applied single-cell proteomics (SCP) to cryopreserved peripheral blood mononuclear cells (PBMCs) from three patients with HNSCC representing distinct stages of metastatic progression and two healthy donors. Proteomic analysis of 619 individual PBMCs resolved major immune cell populations, with up to 1,638 proteins quantified per cell. Trajectory inference, clustering, and differential abundance analyses revealed proteomic remodeling associated with disease progression, with the most pronounced changes occurring within a monocyte cluster composed exclusively of cells from patients with nodal metastasis. This population showed increased abundance of interferon-related proteins, HLA molecules, and myeloid immunoregulatory signatures, consistent with an activated, interferon-associated monocyte state. In parallel, lymphocytes showed reduced coordinated abundance of proteins associated with activation, cytotoxicity, and degranulation, consistent with altered cytotoxic effector programs across disease stages. Overall, these findings reveal distinct proteomic states in circulating monocytes and lymphocytes associated with HNSCC progression and identify selective remodeling of the monocyte compartment in nodal metastatic disease.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 0
- Organism
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- The Single-Cell Landscape of Peripheral and Tumor-infiltrating Immune Cells in HPV- HNSCC
Rômulo Gonçalves Agostinho Galvani, Adolfo Rojas, … Patrícia Severino·bioRxiv·Jan 14, 2025
- Single-Cell Spatial Proteomics Analyses of Head and Neck Squamous Cell Carcinoma Reveal Tumor Heterogeneity and Immune Architectures Associated with Clinical Outcome
K. E. Blise, S. Sivagnanam, … J. Goecks·npj Precision OncologyPeer-reviewed·Feb 25, 2022
- Wiring multiple microenvironment proteomes uncovers the biology in head and neck cancer
A. F. Busso-Lopes, C. Rivera, … A. F. Paes Leme·bioRxiv·Oct 22, 2021
- High-dimensional and spatial analysis reveals immune landscape dependent progression in cutaneous squamous cell carcinoma
A. L. Ferguson, A. R. Sharman, … U. Palendira·Clinical Cancer ResearchPeer-reviewed·Aug 31, 2022
- Small Extracellular Vesicle Cargoes Associated with Lymph Node Metastasis in Head and Neck Cancer
Adnan Shafiq, Shinya Sato, … Alissa M. Weaver·bioRxiv·Jan 2, 2026
- Single-cell Spatial Metabolic and Immune Phenotyping of Head and Neck Cancer Tissues Identifies Tissue Signatures of Response and Resistance to Immunotherapy
N. Jhaveri, B. Ben Cheikh, … O. Braubach·bioRxiv·May 30, 2023