Author

Robert P. Ruggiero

New York University Abu DhabiORCID 0000-0001-9480-4322Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 2 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Organism:non-human primate· 1 Research Focus:phylogenetics / evolution· 1 Approach:simulation· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Stéphane BoissinotiD· 2 shared Aaron C. WacholderiD· 1 shared Corey CoxiD· 1 shared David D. PollockiD· 1 shared Imtiyaz E. HariyaniiD· 1 shared Jonathan ShorttiD· 1 shared Yann BourgeoisiD· 1 shared

Activity by Year

2020-2020 · peak 3/yr

Co-Author Collaboration Network

7 top collaborators · 9 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

Stéphane BoissinotORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

GenomicsPLoS GeneticsPeer-reviewedOct 5, 2020

Disentangling the determinants of transposable elements dynamics in vertebrate genomes using empirical evidences and simulations

Yann Bourgeois, Robert P. Ruggiero, Imtiyaz E. Hariyani, Stéphane Boissinot

The paper investigates factors influencing transposable element dynamics in green anole genomes using empirical data and simulations, finding that recombination, demography, and TE properties interact to shape their frequencies and distributions.

24 citations

non-human primateDNA methylation

𝕏 PostBluesky

GenomicsMobile DNAPeer-reviewedApr 7, 2020

VARIATION IN BASE COMPOSITION UNDERLIES FUNCTIONAL AND EVOLUTIONARY DIVERGENCE IN NON-LTR RETROTRANSPOSONS

Robert P. Ruggiero, Stéphane Boissinot

This study shows non-LTR retrotransposons have varying base composition across clades and hosts, suggesting evolutionary selection and diverse persistence strategies.

6 citations

statistical modelphylogenetics / evolution

𝕏 PostBluesky

GenomicsMobile DNAPeer-reviewedFeb 17, 2020

Finding and extending ancient simple sequence repeat-derived regions in the human genome

Jonathan Shortt, Robert P. Ruggiero, Corey Cox…·David D. Pollock

The paper identifies and extends ancient simple sequence repeat-derived regions in the human genome using a kmer-based approach, finding 6.77% of the genome likely derived from SSRs.

41 citations

humanwhole-genome sequencing

𝕏 PostBluesky