Author

Kavyashree Basavaraju

Institute of Bioinformatics and Applied BiotechnologyORCID 0000-0001-9517-0552Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Developmental Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:differential expression· 3 Organism:human· 3 Research Focus:benchmarking· 2 Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Approach:benchmark study· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Kshitish K. AcharyaiD· 3 shared Akhilesh Kumar BajpaiiD· 2 shared Sravanthi DavuluriiD· 2 shared Balagannavar GovindkumariD· 1 shared Balagannavar Vashishtkumar· 1 shared Bindu SadanandaniD· 1 shared Chitturi Neelima· 1 shared Debarun RoyiD· 1 shared

Activity by Year

2019-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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3 shared papersBioinformatics

Kshitish K. AcharyaORCID

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4 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMar 26, 2024

Comparative Analysis of DNA Structural Parameters and the Corresponding Computational Tools to Differentiate Regulatory DNA Motifs and Promoters

Vasumathi Manivelan, Kavyashree Basavaraju, Bindu Sadanandan…·Kshitish K. Acharya

The paper evaluates DNA structural parameters and tools to differentiate regulatory DNA motifs and promoters, identifying effective combinations for various analyses.

1 citation

humanDNA methylation

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GenomicsNature CommunicationsPeer-reviewedJan 29, 2024

RNA polymerase II pausing is essential during spermatogenesis for appropriate gene expression and completion of meiosis

Emily G. Kaye, Kavyashree Basavaraju, Geoffrey M. Nelson…·Prabhakara Poothi Reddi

The paper investigates the role of RNA polymerase II pausing in spermatogenesis, showing it is essential for gene expression and meiosis completion.

28 citationstop 1%

mousescRNA-seq

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Developmental BiologybioRxivPreprintSep 23, 2019

Listing candidate diagnostic markers and exploring the molecular basis of human spermatogenesis and a type of male infertility (Non-Obstructive Azoospermia), with transcriptomics via the next generation sequencing methods

Balagannavar Govindkumar, Kavyashree Basavaraju, Akhilesh Kumar Bajpai…·K Acharya Kshitish

The paper identifies 100+ genes associated with NOA and spermatogenesis through transcriptomics and shortlists 20 RNA molecules for diagnostic applications.

5 citations

humanbulk RNA-seq

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BioinformaticsbioRxivPreprintMar 3, 2019

How helpful are the protein-protein interaction databases and which ones?

Akhilesh Kumar Bajpai, Sravanthi Davuluri, Kriti Tiwary…·Kshitish K. Acharya

The paper evaluates 375 PPI databases, compares 16 for human PPIs, and recommends STRING and hPRINT for comprehensive PPI coverage.

7 citations

humanprotein structure

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