Author

Kaisa Huhtinen

University of TurkuORCID 0000-0001-9685-5246Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1

Frequent Co-Authors

Johanna HynnineniD· 3 shared Sakari HietaneniD· 3 shared Sampsa HautaniemiiD· 3 shared Anna VähärautioiD· 2 shared Antti HäkkineniD· 2 shared Erdoğan Pekcan ErkaniD· 2 shared Jaana OikkoneniD· 2 shared Jun DaiiD· 2 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersBioinformatics

Johanna HynninenORCID

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3 papers

Recent·Most cited

BioinformaticsGigaSciencePeer-reviewedJan 1, 2024

Deciphering Cancer Genomes with GenomeSpy: A Grammar-Based Visualization Toolkit

Kari Lavikka, Jaana Oikkonen, Yilin Li…·Sampsa Hautaniemi

GenomeSpy is a grammar-based visualization toolkit for genomic data analysis that enables interactive exploration of large datasets, demonstrated on ovarian cancer samples.

10 citations

whole-genome sequencingexperimental assay

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJun 6, 2020

Analysis of single-cell RNA-seq data from ovarian cancer samples before and after chemotherapy links stress-related transcriptional profile withchemotherapy resistance

Kaiyang Zhang, Erdoğan Pekcan Erkan, Jun Dai…·Anna Vähärautio

The paper identifies a stress-related transcriptional profile in ovarian cancer linked to chemotherapy resistance and poor survival, suggesting MEK1/2 inhibitors as a potential treatment.

2 citations

humanscRNA-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintNov 25, 2019

PRISM: Recovering cell type specific expression profilesfrom composite RNA-seq data

Antti Häkkinen, Kaiyang Zhang, Amjad Alkodsi…·Sampsa Hautaniemi

PRISM recovers cell type specific expression profiles from composite RNA-seq data, improving patient response prediction compared to raw bulk data.

1 citation

humanbulk RNA-seq

𝕏 PostBluesky