Author

Mirela Alistar

University of Colorado BoulderORCID 0000-0001-9730-1616Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 2 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1 Approach:machine learning (classical)· 1 Assay:metagenomics· 1 Assay:protein structure· 1

Frequent Co-Authors

Dreycey AlbiniD· 1 shared Michelle RamsahoyeiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

2 top collaborators · 0 mutual co-author links

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1 shared paperBioinformatics

Dreycey AlbinORCID

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2 papers

Recent·Most cited

Systems BiologybioRxivPreprintOct 31, 2025

Revisiting graph-based approaches for small protein analysis: Insights from anti-CRISPR protein networks

Michelle Ramsahoye, Mirela Alistar

The paper evaluates graph-based methods for predicting functional residues in small anti-CRISPR proteins, finding that existing techniques fail due to structural biases in network representations.

DOI 10.1101/2025.10.31.685784

bacteria (other)protein structure

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJul 17, 2023

PhageScanner, a flexible machine learning pipeline for automated bacteriophage genomic and metagenomic feature annotation

Dreycey Albin, Mirela Alistar

PhageScanner is a machine learning pipeline that annotates genomic and metagenomic data for bacteriophage features, including PVPs and toxins, using a BLAST-based classifier and LSTM model.

DOI 10.1101/2023.07.17.549438

bacteria (other)whole-genome sequencing

𝕏 PostBluesky