Xuemei Wei

Hidden causal inference delineates dynamic lncRNA regulation in autism spectrum disorder

This study develops a hidden causality method to infer dynamic lncRNA regulation in ASD, revealing key lncRNAs and their roles in disease pathogenesis and neuroimmune interactions.

ctsGRN: Inferring cell type-specific gene regulatory networks in Arabidopsis

The paper introduces ctsGRN, a framework for inferring cell type-specific gene regulatory networks in Arabidopsis roots using multiple computational methods, and identifies key transcription factors and regulatory modules.

Modelling cell type-specific lncRNA regulatory network in autism with Cycle

Cycle identifies cell type-specific lncRNA regulatory networks in ASD, revealing rewired and conserved modules and hubs associated with ASD-related functions.

Scanning sample-specific miRNA regulation from bulk and single-cell RNA-sequencing data

The paper introduces Scan, a framework that infers sample-specific miRNA regulation from bulk and single-cell RNA-sequencing data using multiple network inference methods.

Pan-cancer characterization of ncRNA synergistic competition uncovers potential carcinogenic biomarkers

This paper introduces SCOM, a framework to identify ncRNA synergistic competition across cancers, revealing hub ncRNAs and potential biomarkers for diagnosis and prognosis.