Author

Julien Gobeill

SIB Swiss Institute of BioinformaticsORCID 0000-0001-9809-7741Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:software / tool· 1 Approach:statistical model· 1 Research Focus:variant effect prediction· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Emilie PascheiD· 2 shared Patrick RuchiD· 2 shared Anaïs MottaziD· 1 shared Cecilia N. ArighiiD· 1 shared Déborah CaucheteuriD· 1 shared Douglas TeodoroiD· 1 shared Julien KnafouiD· 1 shared Nona NaderiiD· 1 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 24 mutual co-author links

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2 shared papersBioinformatics

Emilie PascheORCID

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2 papers

Recent·Most cited

Variomes: a high recall search engine to support the curation of genomic variants

Emilie Pasche, Anaïs Mottaz, Déborah Caucheteur, Julien Gobeill, Pierre-André Michel, Patrick Ruch

Variomes is a system that curates genomic variants by searching literature and prioritizing clinically actionable variants based on publication volume.

Bioinformatics · Mar 10, 2022Peer-reviewedBioinformatics

UPCLASS: a Deep Learning-based Classifier for UniProtKB Entry Publications

Douglas Teodoro, Julien Knafou, Nona Naderi, Emilie Pasche, Julien Gobeill, Cecilia N. Arighi, Patrick Ruch

UPCLASS uses a CNN to classify UniProtKB publications into categories based on protein annotations, achieving higher accuracy than logistic regression and SVM.

Database · Jan 1, 2020Peer-reviewedBioinformatics