Author

Cecilia N. Arighi

University of DelawareORCID 0000-0002-0803-4817Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 4

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 4 Research Focus:benchmarking· 3 Approach:deep learning· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Assay:proteomics· 1 Research Focus:software / tool· 1

Frequent Co-Authors

K. Vijay‐ShankeriD· 2 shared Samir GuptaiD· 2 shared Xihan Qin· 2 shared Alex G. BatemaniD· 1 shared Bernd Roechert· 1 shared Cathy H. WuiD· 1 shared Chih-Hsuan WeiiD· 1 shared Debarati RoychowdhuryiD· 1 shared

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2016-2023 · peak 1/yr

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10 top collaborators · 13 mutual co-author links

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2 shared papersBioinformatics

K. Vijay‐ShankerORCID

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4 papers

Recent·Most cited

eMIND: Enabling automatic collection of protein variation impacts in Alzheimer's disease from the literature

Samir Gupta, Xihan Qin, Qinghua Wang, Julie E. Cowart, Hongzhan Huang, Cathy H. Wu, K. Vijay‐Shanker, Cecilia N. Arighi

eMIND automatically extracts variant impacts in Alzheimer's disease from literature, achieving 0.84 recall and 0.94 precision.

bioRxiv · Sep 7, 2023 · PreprintBioinformatics

emiRIT: A text-mining based resource for microRNA information

Debarati Roychowdhury, Samir Gupta, Xihan Qin, Cecilia N. Arighi, K. Vijay‐Shanker

emiRIT compiles miRNA information from literature using text mining, providing curated relations between miRNAs and genes, diseases, and biological processes.

Database · May 1, 2021Peer-reviewedBioinformatics

UPCLASS: a Deep Learning-based Classifier for UniProtKB Entry Publications

Douglas Teodoro, Julien Knafou, Nona Naderi, Emilie Pasche, Julien Gobeill, Cecilia N. Arighi, Patrick Ruch

UPCLASS uses a CNN to classify UniProtKB publications into categories based on protein annotations, achieving higher accuracy than logistic regression and SVM.

Database · Jan 1, 2020Peer-reviewedBioinformatics

On expert curation and sustainability: UniProtKB/Swiss-Prot as a case study

Sylvain Poux, Cecilia N. Arighi, Michele Magrane, Alex G. Bateman, Chih-Hsuan Wei, Zhiyong Lu, Emmanuel Boutet, Hema Bye‐A‐Jee, Maria Livia Famiglietti, Bernd Roechert

The paper assesses the sustainability of expert curation in UniProtKB/Swiss-Prot by analyzing literature triage and curatorial workload.

bioRxiv · Dec 14, 2016 · PreprintBioinformatics