Author

Martin Vechev

ETH ZurichORCID 0000-0002-0054-9568Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:sequence-to-function modeling· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Organism:E. coli· 1 Assay:long-read sequencing· 1 Approach:optimal transport· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Benjamin BichseliD· 2 shared Pesho IvanoviD· 2 shared André KahlesiD· 1 shared Gunnar RätschiD· 1 shared Harun MustafaiD· 1 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 10 mutual co-author links

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2 shared papersBioinformatics

Benjamin BichselORCID

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2 papers

Recent·Most cited

BioinformaticsLecture notes in computer sciencePeer-reviewedJan 1, 2022

Fast and Optimal Sequence-to-Graph Alignment Guided by Seeds

Pesho Ivanov, Benjamin Bichsel, Martin Vechev

This paper introduces a novel A[*] seed heuristic for sequence-to-graph alignment, achieving faster and optimal alignment by skipping most dynamic programming table cells.

23 citationstop 1%

E. colilong-read sequencing

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJan 22, 2020

AStarix: Fast and Optimal Sequence-to-Graph Alignment

Pesho Ivanov, Benjamin Bichsel, Harun Mustafa…·Martin Vechev

AStarix provides a fast and optimal algorithm for aligning sequences to genome graphs, outperforming existing methods by 1-2 orders of magnitude.

5 citations

whole-genome sequencingstatistical model

𝕏 PostBluesky