A deep learning approach to pattern recognition for short DNA sequences
Akosua Busia, George E. Dahl, Clara Fannjiang, David H. Alexander, Elizabeth H. Dorfman, Ryan E. Poplin, Cory Y. McLean, Pi-Chuan Chang, Mark A. DePristo
A convolutional network trained on 16S reads from 13,838 species reaches within 2.0% of training-set Bayes-optimal species accuracy and usually beats k-mer, alignment and Kraken2 on held-out-species genera.
bioRxiv · Aug 10, 2019 · PreprintBioinformatics✦ In-depth digest