Author

Oliver Smith

University of CopenhagenORCID 0000-0002-0146-9244Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:variant calling· 3 Research Focus:benchmarking· 2 Assay:DNA methylation· 2 Approach:experimental assay· 2 Assay:whole-genome sequencing· 2 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Marcus Thomas P. GilbertiD· 3 shared Mikkel‐Holger S. SindingiD· 3 shared Logan KistleriD· 2 shared Marta Maria CiucaniiD· 2 shared Robin G. AllabyiD· 2 shared Roselyn WareiD· 2 shared Shyam GopalakrishnaniD· 2 shared Alberto CarmagniniiD· 1 shared

Activity by Year

2015-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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3 shared papersGenomics

Marcus Thomas P. GilbertORCID

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Genomes of the extinct Sicilian wolf reveal a complex history of isolation and admixture with ancient dogs

Marta Maria Ciucani, Jazmín Ramos‐Madrigal, Germán Hernández‐Alonso, Alberto Carmagnini, Sabhrina Gita Aninta, Xin Sun, Camilla Hjorth Scharff‐Olsen, Liam Thomas Lanigan, Ilaria Fracasso, Cecilie Grønlund Clausen, Jouni O. Aspi, Ilpo Kojola, Laima Baltrūnaitė, Linas Balčiauskas, Jane Moore, , Shyam Gopalakrishnan

The paper analyzes the genomes of Sicilian wolves to reveal their complex history of isolation and admixture with ancient dogs, showing admixture with European dog breeds and signs of inbreeding.

iScience · Jul 10, 2023Peer-reviewedGenomics

Genomic analyses of the extinct Sardinian dhole (Cynotherium sardous) reaveal its evolutionary history

Marta Maria Ciucani, Julie Kragmose Jensen, Mikkel‐Holger S. Sinding, Oliver Smith, Saverio Bartolini Lucenti, Erika Rosengren, Lorenzo Rook, Caterinella Tuveri, Marisa Arca, Enrico Cappellini, Marco Galaverni, Ettore Randi, Chunxue Guo, Guojie Zhang, Thomas Sicheritz‐Pontén, , Shyam Gopalakrishnan

The paper sequenced the genome of an extinct Sardinian dhole to determine its evolutionary history and phylogenetic position, finding it diverged from Asian dholes and experienced gene flow before isolation.

Current Biology · Oct 19, 2021Peer-reviewedGenomics

Ancient RNA from Late Pleistocene permafrost and historical canids shows tissue-specific transcriptome survival

Oliver Smith, Glenn Dunshea, Mikkel‐Holger S. Sinding, Sergey Fedorov, Mietje Germonpré, Hervé Bocherens, Marcus Thomas P. Gilbert

The paper sequences ancient RNA from permafrost-preserved tissues and historical canids, showing that RNA can survive for over 14,000 years and retain tissue-specific features.

PLoS Biology · Jul 30, 2019Peer-reviewedGenomics

A new model for ancient DNA decay based on paleogenomic meta-analysis

Logan Kistler, Roselyn Ware, Oliver Smith, Matthew J. Collins, Robin G. Allaby

This study analyzes 185 paleogenomic datasets to model ancient DNA decay, finding cytosine deamination follows a thermal age model but DNA fragmentation does not correlate with age.

Nucleic Acids Research · Apr 20, 2017Peer-reviewedGenomics

Thermal age, cytosine deamination and the veracity of 8,000 year old wheat DNA from sediments

Logan Kistler, Oliver Smith, Roselyn Ware, Garry Momber, Richard Bates, Paul Garwood, Simon Fitch, Mark Pallen, Vincent Gaffney, Robin G. Allaby

The paper analyzes 8,000-year-old wheat DNA from sediments, showing it meets authentic ancient DNA criteria through thermal age and cytosine deamination analysis.

bioRxiv · Nov 18, 2015 · PreprintGenomics